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Meal Prep Breakfast Egg Muffins Recipe

If you’re anything like me, mornings can be a whirlwind, and having a quick, nutritious breakfast ready to go is a total game-changer. That’s why I’m thrilled to share this Meal Prep Breakfast Egg Muffins Recipe with you—it’s easy, packed with flavor, and perfect for keeping you fueled during busy days. Plus, once you master it, you’ll have grab-and-go breakfasts for the whole week that never compromise on taste or texture.

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Why You’ll Love This Recipe

  • Super Convenient: You can prep a bunch at once and enjoy healthy breakfasts all week long without the morning rush.
  • Flavor-Packed: With sausage, veggies, and melty cheddar, these egg muffins never feel boring or bland.
  • Customizable: You can swap in your favorite veggies or proteins and still end up with a delicious breakfast.
  • Kid-Friendly: My family absolutely goes crazy for these muffins—they’re great for picky eaters too!

Ingredients You’ll Need

The ingredients here balance protein, veggies, and a touch of creaminess to keep these egg muffins light yet filling. Using fresh spinach and sautéed veggies adds beautiful texture and nutrients, while the cheese keeps it all comforting.

Flat lay of a small white ceramic bowl with golden avocado oil, a mound of fresh raw ground sausage, half a small white onion roughly chopped, half a bright red bell pepper diced, a handful of sliced white mushrooms, a small pile of vibrant green roughly chopped fresh spinach, eight whole uncracked brown eggs arranged neatly, a small white bowl filled with creamy white cottage cheese, a small white bowl heaped with shredded bright orange cheddar cheese, and a small scattering of mixed garlic powder, paprika, salt, and black pepper spices, all placed symmetrically on a clean white marble surface, soft natural light, photo taken with an iPhone, professional food photography style, fresh ingredients, white ceramic bowls, no bottles, no duplicates, no utensils, no packaging --ar 2:3 --v 7 --p m7354615311229779997 - Meal Prep Breakfast Egg Muffins, healthy egg muffins, make ahead breakfast, easy breakfast prep, nutritious egg muffin recipe
  • Avocado oil: I love this oil because it handles high heat well and has a neutral flavor that lets the other ingredients shine.
  • Ground sausage or chopped bacon: Sausage adds a savory punch, but bacon works great too—just make sure it’s cooked crispy for the best texture.
  • Onion: A little onion goes a long way in building flavor; I like to finely chop it so it blends in nicely.
  • Bell pepper: It adds subtle sweetness and color; red peppers work beautifully, but any color is fine.
  • Sliced mushrooms: Mushrooms add an earthy richness that pairs perfectly with sausage.
  • Fresh spinach: I toss this in last when sautéing so it just wilts and keeps its vibrant green color.
  • Large eggs: The main event—make sure they’re fresh for fluffier muffins.
  • Cottage cheese or Greek yogurt or half & half: Adding one of these creamy elements keeps the muffins moist and tender without being heavy.
  • Shredded cheddar cheese: For melty, golden goodness—you can mix sharp or mild depending on your taste.
  • Garlic powder, paprika, salt, pepper: Simple seasonings punch up the flavor without overpowering the eggs.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

One of the things I love most about this Meal Prep Breakfast Egg Muffins Recipe is how easy it is to tweak based on what you have on hand or your dietary preferences—feel free to make it your own.

  • Vegetarian version: Swap the sausage for extra mushrooms, spinach, or even some diced tomatoes—I tried this, and it’s just as satisfying.
  • Spicy kick: Add a pinch of cayenne or some chopped jalapeños to the sautéed veggies for a little heat that wakes up your mornings.
  • Dairy-free option: Skip the cheese or use a dairy-free substitute; I’ve made it with coconut yogurt and it works surprisingly well.
  • Seasonal veggies: Swap bell peppers for zucchini or roasted asparagus depending on the season. That’s how I keep these interesting every few weeks.

How to Make Meal Prep Breakfast Egg Muffins Recipe

Step 1: Sauté Your Flavor Base

Start by preheating your oven to 350ºF. Warm the avocado oil in a large, heavy-duty pan over medium-high heat—this oil’s great because it won’t burn easily. Add your ground sausage, onion, bell pepper, and mushrooms. Sauté for about 3-4 minutes until the sausage starts to brown and the veggies become tender. Then toss in the chopped spinach and cook it just until it wilts—this usually only takes about 30 seconds. I learned that if you overcook the spinach here, it can get mushy in the muffins, which nobody wants!

Step 2: Whisk Your Wet Ingredients and Cheese

In a separate large mixing bowl, whisk together the eggs, cottage cheese (or your preferred creamy option), shredded cheddar, garlic powder, paprika, salt, and pepper. The cottage cheese adds a nice creaminess without making the muffins heavy. Once smooth, gently fold in the cooked sausage and veggie mixture. This step is where all those flavors come together beautifully.

Step 3: Bake to Perfection

Grease your preferred baking vessel—this could be four small glass meal prep containers, a muffin tin, or even a large casserole dish if you want to slice it like a frittata later. Pour or spoon the egg mixture evenly into your chosen dishes. Bake for 20-25 minutes, or until a toothpick inserted in the center comes out clean and the eggs have fully set. When I first made these, I tended to underbake and ended up with a wobbly texture that didn’t reheat well—that toothpick test will save the day!

Step 4: Cool and Store for Easy Meal Prep

Let the egg muffins cool to room temperature before covering. This prevents condensation that can make them soggy. Store them in the fridge for up to 5 days, making mornings a breeze. Trust me, having these ready has saved me from skipping breakfast more times than I can count!

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Pro Tips for Making Meal Prep Breakfast Egg Muffins Recipe

  • Don’t Overcrowd the Pan: When sautéing your sausage and veggies, give them space to brown nicely—crowding creates steam and sogginess.
  • Use Room Temperature Eggs: Eggs whisk better and create fluffier muffins when they’re not cold straight from the fridge. I usually set mine out while prepping the veggies.
  • Test with a Toothpick: Avoid underbaking by checking the center—it saves you from runny eggs that don’t hold up when reheated.
  • Cool Before Covering: Let the muffins come to room temp before sealing to keep them from sweating and getting soggy during storage.

How to Serve Meal Prep Breakfast Egg Muffins Recipe

Meal Prep Breakfast Egg Muffins Recipe - Serving

Garnishes

I usually sprinkle fresh chopped chives or parsley on top when reheating—adds a pop of color and fresh flavor that brightens these muffins up. Sometimes a dash of hot sauce or a few avocado slices on the side take things to another level.

Side Dishes

Pair these egg muffins with a side of fresh fruit, whole grain toast, or even a small green salad if you’re having brunch. On weekends, a crispy hash brown or roasted potatoes make an awesome complement too.

Creative Ways to Present

For a special occasion breakfast, I’ve arranged the muffins on a colorful platter with mini bowls of salsa, guacamole, and sour cream alongside for dipping. You can also slice a large casserole-style batch into squares and stack them with fresh herbs to look like savory breakfast bites—people love it!

Make Ahead and Storage

Storing Leftovers

I keep leftovers in the fridge in airtight containers or the original meal prep containers I used for baking. When stored properly, they stay fresh and tasty for up to 5 days. Just be sure they’ve fully cooled before sealing them up.

Freezing

If I’m making a big batch, I freeze individual muffins separated by parchment paper in a freezer-safe container or bag. They hold up wonderfully and thaw quickly when you’re ready. I usually zap them in the microwave straight from frozen—takes just a minute or two.

Reheating

My go-to reheating method is the microwave: about 35-45 seconds on high is perfect for a single muffin. If you prefer, you can also warm them up in the oven at 325ºF for 10 minutes, which helps retain a slight crisp on the edges.

FAQs

  1. Can I make these egg muffins ahead of time?

    Absolutely! That’s the beauty of this Meal Prep Breakfast Egg Muffins Recipe. You can bake them ahead and store in the fridge for up to 5 days, or freeze for longer storage. They’re perfect for busy mornings when you want something ready to heat and eat.

  2. What can I substitute for sausage if I want a vegetarian option?

    You can easily swap the sausage with extra veggies like mushrooms, bell peppers, or spinach. You could also add plant-based sausage crumbles or even beans for added protein—whatever you enjoy most.

  3. How do I avoid soggy egg muffins?

    Make sure not to overcook the spinach and don’t add extra liquid beyond what the recipe calls for. Also, letting the muffins cool completely before covering and storing helps prevent moisture buildup that can make them soggy.

  4. Can I use a muffin tin instead of meal prep containers?

    Yes! Muffin tins work wonderfully and create perfectly portioned rounds. Just grease well to avoid sticking and keep an eye on baking time—it might be a few minutes faster depending on your oven and muffin size.

Final Thoughts

This Meal Prep Breakfast Egg Muffins Recipe has become my go-to for busy weeks because it strikes the perfect balance of convenience and homemade goodness. I love how it keeps me nourished without the morning scramble, and I’m confident you’ll enjoy the way these muffins keep your mornings stress-free and tasty. Give it a try—I promise it’ll quickly become a breakfast favorite in your house, just like it is in mine!

Print
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Meal Prep Breakfast Egg Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 91 reviews
  • Author: Harper
  • Prep Time: 20 minutes
  • Cook Time: 20-25 minutes
  • Total Time: 40-45 minutes
  • Yield: 4 servings
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American
  • Diet: Low Fat

Description

This Meal Prep Breakfast Eggs recipe is a savory, protein-packed dish perfect for busy mornings. Made with ground sausage or bacon, fresh vegetables, eggs, and cheese, it’s baked to perfection and easy to reheat for a quick and nutritious start to your day. Ideal for meal prepping, these eggs stay fresh in the fridge for up to 5 days.


Ingredients

Protein & Dairy

  • 8 large eggs
  • ½ pound ground sausage or chopped bacon
  • ¼ cup cottage cheese or Greek yogurt or half & half
  • ½ cup shredded cheddar cheese

Vegetables

  • ½ small onion, chopped
  • ½ bell pepper, chopped
  • ½ cup sliced mushrooms
  • 1 cup roughly chopped fresh spinach

Pantry & Spices

  • 1 teaspoon avocado oil
  • ½ teaspoon garlic powder
  • ½ teaspoon paprika
  • ½ teaspoon salt
  • ½ teaspoon pepper


Instructions

  1. Preheat and sauté: Preheat your oven to 350ºF. Heat 1 teaspoon of avocado oil in a large heavy-duty pan over medium-high heat. Add the ground sausage, chopped onion, bell pepper, and sliced mushrooms. Sauté for 3-4 minutes until the vegetables soften and the sausage begins to brown. Add the chopped spinach and sauté briefly until it starts to wilt.
  2. Mix eggs and cheese: In a large mixing bowl, whisk together the 8 eggs, ¼ cup of cottage cheese (or Greek yogurt or half & half), ½ cup shredded cheddar cheese, and the seasonings: ½ teaspoon each of garlic powder, paprika, salt, and pepper.
  3. Combine and prepare for baking: Add the cooked sausage and vegetable mixture to the egg mixture. Stir gently until combined. Grease 4 small glass oven-safe meal prep containers, muffin tins, or a large casserole dish, then divide the mixture evenly among them.
  4. Bake the eggs: Place the containers or dish in the preheated oven and bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean and the eggs are fully set.
  5. Cool and store: Allow the baked eggs to cool to room temperature. Cover and refrigerate for up to 5 days to use as convenient meal prep breakfasts.
  6. Reheat and serve: To reheat, microwave the prepared eggs for 35-45 seconds on high or until warmed through. Enjoy your nutritious breakfast!

Notes

  • If using bacon instead of sausage, cook the bacon first until crispy, then chop it before adding it to the egg mixture to enhance the smoky flavor and avoid soggy texture.
  • Feel free to customize the vegetables to your liking; bell peppers, spinach, and mushrooms provide a nice balance of flavors.
  • These egg dishes can be stored in the refrigerator safely for up to 5 days, making them perfect for meal prep.
  • Ensure to grease the containers well to prevent the eggs from sticking during baking.

Nutrition

  • Serving Size: 1 serving (1 container portion)
  • Calories: 280
  • Sugar: 2g
  • Sodium: 520mg
  • Fat: 20g
  • Saturated Fat: 7g
  • Unsaturated Fat: 11g
  • Trans Fat: 0g
  • Carbohydrates: 5g
  • Fiber: 1.5g
  • Protein: 20g
  • Cholesterol: 360mg

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